PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g006540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 617aa    MW: 66475.6 Da    PI: 9.3329
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g006540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0581103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ C+k F r  nL+ H r H
  Csa04g006540.1  81 FICEVCNKGFQREQNLQLHRRGH 103
                     89*******************88 PP

2zf-C2H212.40.00047157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  Csa04g006540.1 157 WKCDKCSKRYAVQSDWKAHSKTC 179
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.87E-780103No hitNo description
Gene3DG3DSA:3.30.160.606.9E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005281103IPR015880Zinc finger, C2H2-like
PfamPF121713.0E-581103IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9981103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355110122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-5145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.87E-7152177No hitNo description
SMARTSM00355140157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ PPQPPLEAPP QKKKRNQPRT  60
PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSTKEVKRK  120
VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  180
TKEYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNT  240
SSMILGLSHM GAPQNLDHQS SDVLRLGSGG GGAASRSSSD LIAANASGYF MQEQNPSFHD  300
QQDHHHHHHQ QGFLAANNNI KPSPMSFQQN LMQFSHDNHN PASSNLFNLS FLSGNNGVTS  360
ATSNPNAPAA AAVSSGNLMM SNHYDGENAV GGGGEGSTGL FPNNLMSSAD RISSGSVPSL  420
FSSSMQNPNS TPHMSATALL QKAAQMGSTS SNNNNNGSNN NNNNNNNNNN NNNNNASSIL  480
RSFGSGMYGE NESNLQDLMN SFSNPGATGS VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL  540
GVGQIVRSMS GSGGFQQQQQ QQQQQQQQQQ QQQQHGNSRE RVGSSSDSAD RSSMNVNTGG  600
GPASTSPPYG IHHASF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214950.0AJ621495.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 2 (idz2 gene).
GenBankAY0561740.0AY056174.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
GenBankBT0012150.0BT001215.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502221.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZUL30.0IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLM4FIP50.0M4FIP5_BRARP; Uncharacterized protein
STRINGBra040974.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.10.0indeterminate(ID)-domain 5